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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00105654001 | ||||||||
Common Name | GSBRNA2T00105654001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | GeBP | ||||||||
Protein Properties | Length: 309aa MW: 35207.7 Da PI: 9.8277 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 74.7 | 1.7e-23 | 40 | 126 | 3 | 97 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvk.ksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 ++r+w+eeDe+++L+Gl+d++a++g +p +++ +fy+f+ +si k+sk+q+++Kir+LK K ++k +++++++f l GSBRNA2T00105654001 40 SSRIWNEEDELTVLKGLVDYQAQKGIEPRSNWADFYRFLGgGSITGKFSKEQVLSKIRKLKAKLIASMQK---------GNTSQSEAFLL 120 78************************************96369***************************.........45566789999 PP DUF573 92 skkiWg 97 sk+iWg GSBRNA2T00105654001 121 SKRIWG 126 999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 4.3E-17 | 41 | 126 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MVNTSPPSHI LRSRKSKSPG KHASKPSPPE PEHVTKKNSS SRIWNEEDEL TVLKGLVDYQ 60 AQKGIEPRSN WADFYRFLGG GSITGKFSKE QVLSKIRKLK AKLIASMQKG NTSQSEAFLL 120 SKRIWGLQNE SDQSANHAKS DEEMANHEPS NNEVTKADND ESSWAVRDAF ETMVSKGLSD 180 YQKKLQLEKL MNLGSGKRRE LSDEWNELCA EEVQLNIKRL KFSAMLAEAA KCDSVSYCLE 240 SQQKNKSQPP SSSSPKRKHE DDENVSYTEA IVRRRKQQKK YLIWNMKDVL LILKRGFRYN 300 SDWDIFYG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 255 | 275 | KRKHEDDENVSYTEAIVRRRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.4572 | 0.0 | flower| leaf| microspore| microspore-derived embryo| seed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00105654001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL163817 | 6e-32 | AL163817.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F18O22 (ESSA project). | |||
GenBank | CP002688 | 6e-32 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013593964.1 | 0.0 | PREDICTED: uncharacterized protein LOC106302008 isoform X1 | ||||
TrEMBL | A0A078E7W5 | 0.0 | A0A078E7W5_BRANA; BnaC07g09030D protein | ||||
STRING | AT4G00270.1 | 8e-51 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6117 | 17 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00270.1 | 5e-54 | DNA-binding storekeeper protein-related transcriptional regulator |
Publications ? help Back to Top | |||
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