PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00105654001

Common Name

GSBRNA2T00105654001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GeBP

Protein Properties

Length: 309aa MW: 35207.7 Da PI: 9.8277

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00105654001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	74.7	1.7e-23	40	126	3	97
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvk.ksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 ++r+w+eeDe+++L+Gl+d++a++g +p +++ +fy+f+ +si k+sk+q+++Kir+LK K ++k +++++++f l GSBRNA2T00105654001 40 SSRIWNEEDELTVLKGLVDYQAQKGIEPRSNWADFYRFLGgGSITGKFSKEQVLSKIRKLKAKLIASMQK---------GNTSQSEAFLL 120 78**********************************96369*************************.........45566789999 PP DUF573 92 skkiWg 97 sk+iWg GSBRNA2T00105654001 121 SKRIWG 126 999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	4.3E-17	41	126	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MVNTSPPSHI LRSRKSKSPG KHASKPSPPE PEHVTKKNSS SRIWNEEDEL TVLKGLVDYQ 60 AQKGIEPRSN WADFYRFLGG GSITGKFSKE QVLSKIRKLK AKLIASMQKG NTSQSEAFLL 120 SKRIWGLQNE SDQSANHAKS DEEMANHEPS NNEVTKADND ESSWAVRDAF ETMVSKGLSD 180 YQKKLQLEKL MNLGSGKRRE LSDEWNELCA EEVQLNIKRL KFSAMLAEAA KCDSVSYCLE 240 SQQKNKSQPP SSSSPKRKHE DDENVSYTEA IVRRRKQQKK YLIWNMKDVL LILKRGFRYN 300 SDWDIFYG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	255	275	KRKHEDDENVSYTEAIVRRRK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.4572	0.0	flower\| leaf\| microspore\| microspore-derived embryo\| seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00105654001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL163817	6e-32	AL163817.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F18O22 (ESSA project).
GenBank	CP002688	6e-32	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013593964.1	0.0	PREDICTED: uncharacterized protein LOC106302008 isoform X1
TrEMBL	A0A078E7W5	0.0	A0A078E7W5_BRANA; BnaC07g09030D protein
STRING	AT4G00270.1	8e-51	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6117	17	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00270.1	5e-54	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]