PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00105654001
Common NameGSBRNA2T00105654001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 309aa    MW: 35207.7 Da    PI: 9.8277
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00105654001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57374.71.7e-2340126397
               DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvk.ksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 
                          ++r+w+eeDe+++L+Gl+d++a++g +p +++ +fy+f+  +si  k+sk+q+++Kir+LK K    ++k          +++++++f l
  GSBRNA2T00105654001  40 SSRIWNEEDELTVLKGLVDYQAQKGIEPRSNWADFYRFLGgGSITGKFSKEQVLSKIRKLKAKLIASMQK---------GNTSQSEAFLL 120
                          78************************************96369***************************.........45566789999 PP

               DUF573  92 skkiWg 97 
                          sk+iWg
  GSBRNA2T00105654001 121 SKRIWG 126
                          999997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.3E-1741126IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MVNTSPPSHI LRSRKSKSPG KHASKPSPPE PEHVTKKNSS SRIWNEEDEL TVLKGLVDYQ  60
AQKGIEPRSN WADFYRFLGG GSITGKFSKE QVLSKIRKLK AKLIASMQKG NTSQSEAFLL  120
SKRIWGLQNE SDQSANHAKS DEEMANHEPS NNEVTKADND ESSWAVRDAF ETMVSKGLSD  180
YQKKLQLEKL MNLGSGKRRE LSDEWNELCA EEVQLNIKRL KFSAMLAEAA KCDSVSYCLE  240
SQQKNKSQPP SSSSPKRKHE DDENVSYTEA IVRRRKQQKK YLIWNMKDVL LILKRGFRYN  300
SDWDIFYG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1255275KRKHEDDENVSYTEAIVRRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.45720.0flower| leaf| microspore| microspore-derived embryo| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00105654001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1638176e-32AL163817.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F18O22 (ESSA project).
GenBankCP0026886e-32CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013593964.10.0PREDICTED: uncharacterized protein LOC106302008 isoform X1
TrEMBLA0A078E7W50.0A0A078E7W5_BRANA; BnaC07g09030D protein
STRINGAT4G00270.18e-51(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61171741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00270.15e-54DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]